Publications

Selected publications.

Search our research by title, author, or keyword. For the most complete list, visit Google Scholar.

2026

Novel adenovirus vaccine vectors lacking thrombosis-associated interactions with platelet factor 4

Erwan Sallard, Daniel Pembaur, Matias Ciancaglini, Lucie Manov-Bouard, Denice Weklak, Firas Hamdan, Chun Kit Chan, Franziska Jönsson, Elise Chabot, Carmen Musielak, Elena Scurti, Sara Feola, Sebastian Schellhorn, Nissai Beaude, Katrin Schröer, Daipayan Sarkar, Georgia Koukou, Xiaoyan Wang, Natascha Schmidt, Wibke Bayer, Malik Aydin, Vera Kemp, Alan L. Parker, Dirk Grimm, Tapani Viitala, Vincenzo Cerullo, Abhishek Singharoy, Alexander T. Baker, Wenli Zhang, Daniel Pinschewer, Florian Kreppel, Anja Ehrhardt

iScience

2025

2024

Outcomes of the EMDataResource cryo-EM ligand modeling challenge

Catherine L. Lawson, Andriy Kryshtafovych, Grigore D. Pintilie, Stephen K. Burley, Jiří Černý, Vincent B. Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G. Prisant, Randy J. Read, Jane S. Richardson, Alexis L. Rohou, Bohdan Schneider, Benjamin D. Sellers, Chenghua Shao, Elizabeth Sourial, Chris I. Williams, Christopher J. Williams, Ying Yang, Venkat Abbaraju, Pavel V. Afonine, Matthew L. Baker, Paul S. Bond, Tom L. Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, K. D. Cowtan, Frank DiMaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F. Hryc, Carola Hunte, Maxim Igaev, Agnel P. Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai R. Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W. Moriarty, Andrew Muenks, Garib N. Murshudov, Robert A. Nicholls, Mateusz Olek, Colin M. Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R. Pothula, Christopher N. Rowley, Daipayan Sarkar, Luisa U. Schäfer, Christopher J. Schlicksup, Gunnar F. Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V. Sobolev, Genki Terashi, Andrea C. Vaiana, Sundeep C. Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn D. Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F. Schmid, Helen M. Berman, Wah Chiu

Nature Methods

2023

2022

2021

ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome

Alexander T. Baker, Ryan J. Boyd, Daipayan Sarkar, Alicia Teijeira-Crespo, Chun Kit Chan, Emily Bates, Kasim Waraich, John Vant, Eric Wilson, Chloe D. Truong, Magdalena Lipka-Lloyd, Petra Fromme, Josh Vermaas, Dewight Williams, LeeAnn Machiesky, Meike Heurich, Bolni M. Nagalo, Lynda Coughlan, Scott Umlauf, Po-Lin Chiu, Pierre J. Rizkallah, Taylor S. Cohen, Alan L. Parker, Abhishek Singharoy, Mitesh J. Borad

Science Advances

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Catherine L. Lawson, Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad, Paul Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kevin Cowtan, Ken A. Dill, Frank DiMaio, Daniel P. Farrell, James S. Fraser, Mark A. Herzik Jr., Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel P. Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M. Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D. Pintilie, Jane S. Richardson, Peter B. Rosenthal, Daipayan Sarkar, Luisa U. Schafer, Michael F. Schmid, Gunnar F. Schroder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C. Terwilliger, Andrea Vaiana, Liguo Wang, Zhe Wang, Stephanie A. Wankowicz, Christopher J. Williams, Martyn Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M. Berman, Wah Chiu

Nature Methods

2020

XFEL and NMR structures of Francisella lipoprotein reveal conformational space of drug target against tularemia

James Zook, Mrinal Shekhar, Debra Hansen, Chelsie Conrad, Thomas Grant, Chitrak Gupta, Thomas White, Anton Barty, Shibom Basu, Yun Zhao, Nadia Zatsepin, Andrii Ishchenko, Alex Batyuk, Cornelius Gati, Chufeng Li, Lorenzo Galli, Jesse Coe, Mark Hunter, Meng Liang, Uwe Weierstall, Garret Nelson, Daniel James, Benjamin Stauch, Felicia Craciunescu, Darren Thifault, Wei Liu, Vadim Cherezov, Abhishek Singharoy, Petra Fromme

Structure

2019

Atoms to phenotypes: molecular design principles of cellular energy metabolism

Abhishek Singharoy, Christopher Maffeo, Karelia H. Delgado-Magnero, David J.K. Swainsbury, Melih Sener, Ulrich Kleinekathofer, John W. Vant, Jonathan Nguyen, Andrew Hitchcock, Barry Isralewitz, Ivan Teo, Danielle E. Chandler, John E. Stone, James C. Phillips, Taras V. Pogorelov, M. Ilaria Mallus, Christophe Chipot, Zaida Luthey-Schulten, D. Peter Tieleman, C. Neil Hunter, Emad Tajkhorshid, Aleksei Aksimentiev, Klaus Schulten

Cell

2018

2017

2016

2014

2013

2011